Publications
Scientific publications provide an in-depth look into the details of our research. We strive to ensure that all our publications are open-access.
A list of our publications with their respective DOIs can be found below.
For our latest publications please visit Google Scholar.
Probing the Santa Barbara Basin benthos Hydrocarbon seeps
Bernhard, J.M., Edgcomb, V.P., Powers, C.C., Travis, B., Lott, S., Yousavich, D., Haiat, K., Raineault, N., and Girguis, P.R. 2022. Oceanography, (35)1, 26-27.
Ocean system science to inform the exploration of ocean worlds
German, C.R., Blackman, D.K., Fisher, A.T., Girguis, P.R., Hand, K.P., Hoehler, T.M., Huber, J.A., Marshall, J.C., Pietro, K.R., Seewald, J.S., and Shock, E.L. 2022. Oceanography, 35(1), 16-22. doi:10.5670/oceanog.2021.411
Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity
Shaffer, J.P., Nothias, L-F., Thompson, L.R., Sanders, J.G., et al. and the Earth Microbiome Project 500 (EMP500) Consortium. 2022. Nature Microbiology, 7, 2128–2150. doi:10.1038/s41564-022-01266-x
Discovering hydrothermalism from Afar: In Situ methane instrumentation and change-point detection for decision-making
Preston, Victoria, Flaspohler, G., Kapit, J., Pardis, W.,Youngs, S., Martocello III, D.E., Roy, N., Girguis, P.R., Wankel, S.D., and Michel, A.P.M. 2022. Frontiers in Earth Science, 1965. doi:10.3389/feart.2022.984355
Using deep-sea images to examine ecosystem services associated with methane seeps
Le, J.T., Girguis, P.R., and Levin, L.A. 2022. Marine Environmental Research, 105740. doi:10.1016/j.marenvres.2022.105740
Impacts of bioturbation on iron biogeochemistry and microbial communities in coastal sediment mesocosms under varying degrees of hypoxia
Beam, J.P., Michaud, A.B., Johnston, D.T., Girguis, P.R., and Emerson, D. 2022. Estuarine, Coastal and Shelf Science, 108032. doi:10.1016/j.ecss.2022.108032
Low-cost, deep-sea imaging and analysis tools for deep-sea exploration: A collaborative design study
Bell, K.L.C., Chow, J.S., Hope, A., Quinzin, M.C., Cantner, K.A., Amon, D.J., Cramp J.E., Rotjan R.D., Kamalu L., de Vos, A., Talma S., Buglass S., Wade V., Filander Z., Noyes K., Lynch M., Knight A., Lourenço N., Girguis P.R., de Sousa J.B., Blake C., Kennedy B.R.C., Noyes T.J., and McClain C.R. 2022. Frontier in Marine Science. doi:10.3389/fmars.2022.873700
Concentrations, d13C and D14C data for DOC and DIC in fluids collected from North Pond Cork Observatories U1382A and U1383C and from bottom seawater in 2012, 2014 and 2017
Girguis, P.R., and Shah Walter, S.R. 2022. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2022-08-10. doi:10.26008/1912/bco-dmo.876729.1. (NOTE: This is a publicly available dataset)
Differentiated evolutionary strategies of genetic diversification in atlantic and pacific thaumarchaeal populations
Hwang, Y. and Girguis, P.R. 2022. Msystems, e01477-21. doi:10.1128/msystems.01477-21
Evidence for horizontal and vertical transmission of Mtr-mediated extracellular electron transfer among the Bacteria
Baker, I.R., Conley, B.E., Gralnick, J.A., and Girguis, P.R. 2022. Mbio, 13(1), e02904-21. doi:10.1128/mbio.02904-21
Novel insights on obligate symbiont lifestyle and adaptation to chemosynthetic environment as revealed by the giant tubeworm genomede
de Oliveira, A.L., Mitchell, J., Girguis, P.R., and Bright, M. 2022. Molecular Biology and Evolution, 39(1), msab347. doi:10.1093/molbev/msab347
CRISPR/Cas9‐induced disruption of Bodo saltansparaflagellar rod‐2 gene reveals its importance for cell survival
Gomaa, F., Li, Z.H., Beaudoin, D.J., Alzan, H., Girguis, P.R., Docampo, R., and Edgcomb, V.P., 2022. Environmental Microbiology. doi:10.1111/1462-2920.15918